Plotting
========

Volcano Plots
--------------

.. autofunction:: kompot.plot.volcano_de

.. autofunction:: kompot.plot.volcano_da

.. autofunction:: kompot.plot.multi_volcano_da

Expression Plots
----------------

.. autofunction:: kompot.plot.plot_gene_expression

Heatmaps
--------

.. autofunction:: kompot.plot.heatmap

Direction Plots
---------------

.. autofunction:: kompot.plot.direction_barplot

Smoothing Plots
----------------

.. autofunction:: kompot.plot.plot_smoothing

Embedding Plots
---------------

.. autofunction:: kompot.plot.embedding

StringDB Integration
--------------------

The :class:`kompot.plot.StringDBReport` class provides tools to generate gene set reports
with the StringDB network and resource links.

.. autoclass:: kompot.plot.StringDBReport
   :members:
   :noindex: